PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000571.1_g00009.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family TCP
Protein Properties Length: 574aa    MW: 63136.7 Da    PI: 6.7691
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000571.1_g00009.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP115.57.1e-36203333289
                      TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..eaesssssasns 85 
                              +g+kdrhsk++T++g+RdRRvRl a++a++f+d+qd+LG+d++sk+++WL+++akpai+el+++++ +++ +  + +++  ++++ 
  Itr_sc000571.1_g00009.1 203 TGRKDRHSKVCTAKGPRDRRVRLAAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKPAIDELAELPAWKPNTVnpNFDQEDAQKQHR 288
                              79**************************************************************8888877744333333333333 PP

                      TCP  86 ssg...........................................k 89 
                                +                                            
  Itr_sc000571.1_g00009.1 289 --EtpgdanlldnvagpskrgmimqesenessflppsldsdsiadtI 333
                              ..224666777777655555555555544555555555555555542 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036348.8E-32203311IPR005333Transcription factor, TCP
PROSITE profilePS5136933.521205263IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 574 aa     Download sequence    Send to blast
MRLQRTLILL SDPRLPPSPL ASTPLITQTR IHLPPSSSSS SSSCSSSLEM NTLGCLGEEV  60
GETERGISIV LIGVGRAERI EEWEVGWVVS DFREWEKPLR KSCVYQKLDP QRNQQQKQHH  120
RLHFSDQIQG EEEEEDPSGN PPPPPPKKRS YFPSTEEHAR LRGRMGENRQ QQQQQQGSSS  180
RLGLRNAGGE IVEVQGGHIV RSTGRKDRHS KVCTAKGPRD RRVRLAAHTA IQFYDVQDRL  240
GYDRPSKAVD WLIKKAKPAI DELAELPAWK PNTVNPNFDQ EDAQKQHRET PGDANLLDNV  300
AGPSKRGMIM QESENESSFL PPSLDSDSIA DTIKSFFPMG ASEQPNSSSM QFQTFAQHSD  360
LLSRSQSQDL RLSLQSFQDP TILLHHQNQQ AQHHPNPGSH RAILTGFDAS GWAEHNQQNQ  420
QRFPAWHGGG GGDGAAAAAT CSSSGSGGAA AASATGGYLF NSPQQPLFQQ LFGGQNQFFP  480
SQRGPLQSSY TPSVRAWMDP SPAIAIASVD PNQQHQHYQS AMLPIYPSSL SGIGFSTGVG  540
EFSGFRIPAR IQGEEEEHDG ISDKPSSASS DSRR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00009PBMTransfer from 929286Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM3577900.0HM357790.2 Ipomoea nil TCP family transcription factor TCP4 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016453253.11e-158PREDICTED: transcription factor TCP4-like
SwissprotQ8LPR52e-93TCP4_ARATH; Transcription factor TCP4
TrEMBLE2GIJ00.0E2GIJ0_IPONI; TCP family transcription factor TCP4
STRINGPGSC0003DMT4000322681e-148(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32072349
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53230.15e-51TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 3